From fe645c1a9eb300ce1ac957e9ba869f4382e3b60f Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sun, 8 Oct 2017 18:38:24 -0500
Subject: [PATCH] Add in place holders for testing trim reads.
---
workflow/tests/test_trim_reads.py | 17 +++++++++++++++++
1 file changed, 17 insertions(+)
create mode 100644 workflow/tests/test_trim_reads.py
diff --git a/workflow/tests/test_trim_reads.py b/workflow/tests/test_trim_reads.py
new file mode 100644
index 0000000..cd15430
--- /dev/null
+++ b/workflow/tests/test_trim_reads.py
@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+
+import pytest
+import os
+import gzip
+
+
+def test_trim_reads_singleend():
+ # assert os.path.getsize('sample1_R1.fastq.gz') != os.path.getsize('sample1_R1.trim.fastq.gz')
+ # check the size of the lines using
+ # a = sum(1 for _ in gzip.open('input_2.small_R1.fastq.gz'))
+ pass
+
+
+def test_trim_reads_pairedend():
+ # Do the same thing for paired end data
+ pass
--
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