From fe188a1003516e4fe73d8f90b50cbffb88865505 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 13 Aug 2018 16:03:20 -0500
Subject: [PATCH] Add in Resume option.
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 79370bd..fcde43c 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -16,7 +16,7 @@ user_configuration:
single_end_mouse:
stage: integration
script:
- - nextflow run workflow/main.nf
+ - nextflow run workflow/main.nf -resume
- pytest -m integration
- pytest --cov=./workflow/scripts
artifacts:
@@ -25,6 +25,6 @@ single_end_mouse:
paired_end_human:
stage: integration
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
artifacts:
expire_in: 2 days
--
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