From fb9bb7ef8da8a8d034670cae4cb35e9509839103 Mon Sep 17 00:00:00 2001
From: Beibei Chen <beibei.chen@utsouthwestern.edu>
Date: Fri, 3 Mar 2017 16:25:11 -0600
Subject: [PATCH] typo fix
---
workflow/main.nf | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 5003783..b2b01cc 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -46,7 +46,7 @@ process run_deeptools {
file deeptools_peak_files from deeptools_peaks.toList()
file deeptools_bam_indexes from deeptools_bamindex.toList()
output:
- stdout result
+ file "*deeptools*" into deeptools_output
script:
"""
module load python/2.7.x-anaconda
@@ -83,7 +83,7 @@ process run_chipseeker_diffpeak {
file diffpeak_design_file from diffpeaksdesign_chipseeker
file diffpeaks from diffpeaks_chipseeker
output:
- stdout result_chipseeker
+ file "*chipseeker*" into chipseeker_diffpeak_output
script:
"""
module load python/2.7.x-anaconda
@@ -98,7 +98,7 @@ process run_chipseeker_originalpeak {
file design_file from chipseeker_design
file chipseeker_peak_files from chipseeker_peaks.toList()
output:
- stdout result1
+ file "*chipseeker*" into chipseeker_originalpeak_output
script:
"""
module load python/2.7.x-anaconda
@@ -113,7 +113,7 @@ process run_meme_original {
file design_meme from meme_design
file meme_peak_files from meme_peaks.toList()
output:
- stdout result_meme_original
+ file "*meme*" into meme_original_output
script:
"""
module load python/2.7.x-anaconda
@@ -129,7 +129,7 @@ process run_meme_diffpeak {
file peaks_meme from diffpeaks_meme
file diffpeak_design from diffpeaksdesign_meme
output:
- stdout result_meme
+ file "*meme*" into meme_diffpeak_output
script:
"""
module load python/2.7.x-anaconda
--
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