From f6af50dcd882db3da7d0af721e302738ea75581e Mon Sep 17 00:00:00 2001
From: Beibei Chen <beibei.chen@utsouthwestern.edu>
Date: Fri, 21 Apr 2017 16:37:00 -0500
Subject: [PATCH] Update the yml file
---
astrocyte_pkg.yml | 14 ++++----------
1 file changed, 4 insertions(+), 10 deletions(-)
diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml
index 3265925..fb2cd5e 100644
--- a/astrocyte_pkg.yml
+++ b/astrocyte_pkg.yml
@@ -82,17 +82,11 @@ workflow_parameters:
description: |
Bam files of all samples
- - id: bais
- type: files
- required: true
- description: |
- Bam index files of all samples
-
- id: peaks
type: files
required: true
description: |
- Peak files of all samples. Bed format
+ Peak files of all samples. Peaks should be sorted. Bed format
- id: design
type: files
@@ -105,9 +99,9 @@ workflow_parameters:
- id: genomepath
type: select
choices:
- - [ '/project/shared/bicf_workflow_ref/GRCh38', 'hg38']
- - [ '/project/shared/bicf_workflow_ref/GRCh37', 'hg19']
- - [ '/project/shared/bicf_workflow_ref/GRCm38', 'mm10']
+ - [ '/project/shared/bicf_workflow_ref/GRCh38', 'human GRCh38']
+ - [ '/project/shared/bicf_workflow_ref/GRCh37', 'human GRCh37']
+ - [ '/project/shared/bicf_workflow_ref/GRCm38', 'mouse GRCm38']
required: true
description: |
Reference genome for annotation
--
GitLab