From f545947da68f96e50fa3de502f7703d757ec34b5 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 24 Oct 2017 09:02:32 -0500
Subject: [PATCH] Fix options.
---
workflow/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 023d5e7..0b8e0d5 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -239,12 +239,12 @@ process crossReads {
if (pairedEnd) {
"""
- python3 $baseDir/scripts/xcor.py -b $seTagAlign -p
+ python3 $baseDir/scripts/xcor.py -t $seTagAlign -p
"""
}
else {
"""
- python3 $baseDir/scripts/xcor.py -b $seTagAlign
+ python3 $baseDir/scripts/xcor.py -t $seTagAlign
"""
}
--
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