From ea889a6278e8486efc3da0854c214d17621974b3 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 23 Oct 2017 12:15:48 -0500
Subject: [PATCH] Fix output file name.
---
workflow/scripts/convert_reads.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/scripts/convert_reads.py b/workflow/scripts/convert_reads.py
index e091296..d745047 100644
--- a/workflow/scripts/convert_reads.py
+++ b/workflow/scripts/convert_reads.py
@@ -109,7 +109,7 @@ def main():
bam_basename = os.path.basename(
utils.strip_extensions(bam, ['.bam']))
- tag_filename = bam_basename + 'tagAlign.gz'
+ tag_filename = bam_basename + '.tagAlign.gz'
convert_mapped(bam, tag_filename)
if paired: # paired-end data
--
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