From e6b416e504af47e6c98a4c963bc9ae28d44b3ac8 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 22 Jun 2020 06:38:33 -0500
Subject: [PATCH] Update reference and version.

---
 CHANGELOG.md             | 3 +++
 README.md                | 4 ++--
 docs/references.md       | 2 +-
 workflow/main.nf         | 2 +-
 workflow/nextflow.config | 2 +-
 5 files changed, 8 insertions(+), 5 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 1d925fc..6485234 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,6 +2,9 @@
 
 All notable changes to this project will be documented in this file.
 
+## [publish_1.1.2 ] - 2020-06-22
+- Add pipeline tracking
+
 ## [publish_1.1.1 ] - 2020-04-23
 ### Added
 - Add Nextflow to references.md
diff --git a/README.md b/README.md
index 65a0d7a..0eccb2c 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,6 @@
 # **ChIP-seq Manual**
-## Version 1.1.1
-## April 22, 2020
+## Version 1.1.2
+## June 21, 2020
 
 # BICF ChIP-seq Pipeline
 
diff --git a/docs/references.md b/docs/references.md
index 1f0f91a..4c6a2df 100644
--- a/docs/references.md
+++ b/docs/references.md
@@ -52,7 +52,7 @@
   * Ewels P., Magnusson M., Lundin S. and Käller M. 2016. MultiQC: Summarize analysis results for multiple tools and samples in a single report. Bioinformatics 32(19): 3047–3048. doi:[10.1093/bioinformatics/btw354](https://dx.doi.org/10.1093/bioinformatics/btw354)
 
 17. **BICF ChIP-seq Analysis Workflow**:
-  * Spencer D. Barnes, Holly Ruess, Jeremy A. Mathews, Beibei Chen, and Venkat S. Malladi. 2020. BICF ChIP-seq Analysis Workflow (publish_1.1.1). Zenodo. doi:[10.5281/zenodo.3759481](https://doi.org/10.5281/zenodo.3759481)
+  * Spencer D. Barnes, Holly Ruess, Jeremy A. Mathews, Beibei Chen, and Venkat S. Malladi. 2020. BICF ChIP-seq Analysis Workflow (publish_1.1.2). Zenodo. doi:[10.5281/zenodo.3903277](https://doi.org/10.5281/zenodo.3903277)
 
 18. **Nextflow**:
   * Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., and Notredame, C. 2017. Nextflow enables reproducible computational workflows. Nature biotechnology, 35(4), 316.
diff --git a/workflow/main.nf b/workflow/main.nf
index 5836161..108ec1b 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -121,7 +121,7 @@ process trackStart {
       "astrocyte": ${params.astrocyte}, \
       "status": "started", \
       "nextflowVersion": "${workflow.nextflow.version}", \
-      "pipelineVersion": "1.1.1", \
+      "pipelineVersion": "1.1.2", \
       "ci": ${params.ci}, \
       "dev": ${params.dev}}' \
   "https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking"
diff --git a/workflow/nextflow.config b/workflow/nextflow.config
index 06a5685..de9b85c 100644
--- a/workflow/nextflow.config
+++ b/workflow/nextflow.config
@@ -25,7 +25,7 @@ manifest {
   name = 'chipseq_analysis'
   description = 'BICF ChIP-seq Analysis Workflow.'
   homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis'
-  version = '1.1.1'
+  version = '1.1.2'
   mainScript = 'main.nf'
   nextflowVersion = '>=0.31.0'
 }
-- 
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