diff --git a/README.md b/README.md index 5fe6542df1603ed4a7eb3bfc5943dfc8650e92dd..0cbc9d47de6d7ba639749a8353f6fa121c825022 100644 --- a/README.md +++ b/README.md @@ -1,9 +1,10 @@ # BICF ChIP-seq Pipeline [](https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/commits/master) +[](https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/commits/master) [](https://www.nextflow.io/) -[](https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/commits/master) +[](https://astrocyte-test.biohpc.swmed.edu/static/docs/index.html) ## Introduction @@ -12,3 +13,5 @@ BICF ChIPseq is a bioinformatics best-practice analysis pipeline used for ChIP-s The pipeline uses [Nextflow](https://www.nextflow.io), a bioinformatics workflow tool. It pre-processes raw data from FastQ inputs, aligns the reads and performs extensive quality-control on the results. This pipeline is primarily used with a SLURM cluster on the [BioHPC Cluster](https://biohpc.swmed.edu/). However, the pipeline should be able to run on any system that Nextflow supports. + +Additionally, the pipeline is designed to work with [Astrocyte Workflow System](https://astrocyte-test.biohpc.swmed.edu/static/docs/index.html) using a simple web interface.