From de0f28375cf3414532abf2fab0275a21c5f96c23 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sun, 8 Oct 2017 22:32:39 -0500
Subject: [PATCH] Fix syntax.
---
workflow/tests/test_trim_reads.py | 13 ++++++-------
1 file changed, 6 insertions(+), 7 deletions(-)
diff --git a/workflow/tests/test_trim_reads.py b/workflow/tests/test_trim_reads.py
index c7821f0..0cf4a29 100644
--- a/workflow/tests/test_trim_reads.py
+++ b/workflow/tests/test_trim_reads.py
@@ -2,16 +2,15 @@
import pytest
import os
-import gzip
def test_trim_reads_singleend():
- raw_fastq = os.path.dirname(os.path.abspath(__file__)) +
- '../../test_data/ENCFF833BLU_fastq.gz')
- trimmed_fastq = os.path.dirname(os.path.abspath(__file__)) +
- '../output/trimReads/ENCFF833BLU_trimmed.fq.gz')
- trimmed_fastq_report = os.path.dirname(os.path.abspath(__file__)) +
- '../output/trimReads/ENCFF833BLU.fastq.gz_trimming_report.txt')
+ raw_fastq = os.path.dirname(os.path.abspath(__file__)) + \
+ '../../test_data/ENCFF833BLU_fastq.gz'
+ trimmed_fastq = os.path.dirname(os.path.abspath(__file__)) + \
+ '../output/trimReads/ENCFF833BLU_trimmed.fq.gz'
+ trimmed_fastq_report = os.path.dirname(os.path.abspath(__file__)) + \
+ '../output/trimReads/ENCFF833BLU.fastq.gz_trimming_report.txt'
assert os.path.getsize(raw_fastq) != os.path.getsize(trimmed_fastq)
assert os.path.getsize(trimmed_fastq) == 2512853101
assert 'Trimming mode: single-end' in open(trimmed_fastq_report).readlines()[4]
--
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