diff --git a/workflow/tests/test_trim_reads.py b/workflow/tests/test_trim_reads.py index c7821f0b77ee05de80ca70c3e4ee6216139d6240..0cf4a2940b7211922bdfcb3bfbadc8bc9d177888 100644 --- a/workflow/tests/test_trim_reads.py +++ b/workflow/tests/test_trim_reads.py @@ -2,16 +2,15 @@ import pytest import os -import gzip def test_trim_reads_singleend(): - raw_fastq = os.path.dirname(os.path.abspath(__file__)) + - '../../test_data/ENCFF833BLU_fastq.gz') - trimmed_fastq = os.path.dirname(os.path.abspath(__file__)) + - '../output/trimReads/ENCFF833BLU_trimmed.fq.gz') - trimmed_fastq_report = os.path.dirname(os.path.abspath(__file__)) + - '../output/trimReads/ENCFF833BLU.fastq.gz_trimming_report.txt') + raw_fastq = os.path.dirname(os.path.abspath(__file__)) + \ + '../../test_data/ENCFF833BLU_fastq.gz' + trimmed_fastq = os.path.dirname(os.path.abspath(__file__)) + \ + '../output/trimReads/ENCFF833BLU_trimmed.fq.gz' + trimmed_fastq_report = os.path.dirname(os.path.abspath(__file__)) + \ + '../output/trimReads/ENCFF833BLU.fastq.gz_trimming_report.txt' assert os.path.getsize(raw_fastq) != os.path.getsize(trimmed_fastq) assert os.path.getsize(trimmed_fastq) == 2512853101 assert 'Trimming mode: single-end' in open(trimmed_fastq_report).readlines()[4]