diff --git a/test_data/design_diff_PE.txt b/test_data/design_diff_PE.txt index 7b6f73c61e93e13416b0f20f093ee94b89627cda..a0765823e6396311f55fc53b636e80f290c571e3 100644 --- a/test_data/design_diff_PE.txt +++ b/test_data/design_diff_PE.txt @@ -4,4 +4,4 @@ ENCLB568IYX ENCSR729LGA MCF-7 SP1 None 2 ENCLB336TVW ENCFF330MCZ.fastq.gz ENCFF2 ENCLB678IDC ENCSR217LRF MCF-7 Control None 1 ENCLB678IDC ENCFF002DTU.fastq.gz ENCFF002EFI.fastq.gz ENCLB336TVW ENCSR217LRF MCF-7 Control None 2 ENCLB336TVW ENCFF002EFG.fastq.gz ENCFF002DTS.fastq.gz ENCLB552ACZ ENCSR757EMK MCF-7 SUZ12 None 1 ENCLB678IDC ENCFF833EZX.fastq.gz ENCFF161HBP.fastq.gz -ENCLB568IYX ENCSR757EMK MCF-7 SUZ12 None 2 ENCLB336TVW ENCFF776KZU.fastq.gz ENCFF119KHM.fastq.gz +ENCLB872TQR ENCSR757EMK MCF-7 SUZ12 None 2 ENCLB336TVW ENCFF776KZU.fastq.gz ENCFF119KHM.fastq.gz diff --git a/workflow/tests/test_annotate_peaks.py b/workflow/tests/test_annotate_peaks.py index 0b0d8f12591e72f7f53d597e97615bd150615918..30ff74f037e994b8e939314983e964b98eb20c0b 100644 --- a/workflow/tests/test_annotate_peaks.py +++ b/workflow/tests/test_annotate_peaks.py @@ -16,13 +16,13 @@ def test_annotate_peaks_singleend(): assert os.path.exists(os.path.join(test_output_path, 'ENCSR238SGC.chipseeker_upsetplot.pdf')) annotation_file = test_output_path + 'ENCSR238SGC.chipseeker_annotation.csv' assert os.path.exists(annotation_file) - assert utils.count_lines(annotation_file) == 149820 + assert utils.count_lines(annotation_file) == 152840 @pytest.mark.pairedend def test_annotate_peaks_pairedend(): - assert os.path.exists(os.path.join(test_output_path, 'ENCSR217LGA.chipseeker_pie.pdf')) - assert os.path.exists(os.path.join(test_output_path, 'ENCSR217LGA.chipseeker_upsetplot.pdf')) - annotation_file = test_output_path + 'ENCSR217LGA.chipseeker_annotation.csv' + assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA..chipseeker_pie.pdf')) + assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA..chipseeker_upsetplot.pdf')) + annotation_file = test_output_path + 'ENCSR729LGA..chipseeker_annotation.csv' assert os.path.exists(annotation_file) assert utils.count_lines(annotation_file) == 25391 diff --git a/workflow/tests/test_call_peaks_macs.py b/workflow/tests/test_call_peaks_macs.py index 2192586a56a0d92fbfbd0fe32885e5ad1d766d1c..dabfd7167f1e295735066db378028d17124e2654 100644 --- a/workflow/tests/test_call_peaks_macs.py +++ b/workflow/tests/test_call_peaks_macs.py @@ -23,4 +23,4 @@ def test_call_peaks_macs_pairedend(): assert os.path.exists(os.path.join(test_output_path, 'ENCLB568IYX.pvalue_signal.bw')) assert os.path.exists(os.path.join(test_output_path, 'ENCLB568IYX.xls')) peak_file = test_output_path + 'ENCLB568IYX.narrowPeak' - assert utils.count_lines(peak_file) == 138827 + assert utils.count_lines(peak_file) == 112652 diff --git a/workflow/tests/test_overlap_peaks.py b/workflow/tests/test_overlap_peaks.py index ccbf186aa12798878db6b982a5a5d4574df01461..99d43b87939617c801bad0389f14e2683cde0f82 100644 --- a/workflow/tests/test_overlap_peaks.py +++ b/workflow/tests/test_overlap_peaks.py @@ -37,7 +37,7 @@ def test_check_update_design(design_diff): def test_overlap_peaks_singleend(): assert os.path.exists(os.path.join(test_output_path, 'ENCSR238SGC.rejected.narrowPeak')) peak_file = test_output_path + 'ENCSR238SGC.replicated.narrowPeak' - assert utils.count_lines(peak_file) == 149828 + assert utils.count_lines(peak_file) == 152848 @pytest.mark.pairedend