Commit d7f31c15 authored by Venkat Malladi's avatar Venkat Malladi
Browse files

Merge branch '79-sigbus_error' into ci-merge-test

parents 96ed1fb4 92ea443a
Pipeline #6410 canceled with stages
in 99 minutes and 14 seconds
...@@ -35,7 +35,7 @@ single_end_mouse: ...@@ -35,7 +35,7 @@ single_end_mouse:
only: only:
- master - master
script: script:
- nextflow run workflow/main.nf --astrocyte true - NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --astrocyte true
- pytest -m singleend - pytest -m singleend
paired_end_human: paired_end_human:
...@@ -45,7 +45,7 @@ paired_end_human: ...@@ -45,7 +45,7 @@ paired_end_human:
except: except:
- master - master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false - NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false
- pytest -m pairedend - pytest -m pairedend
single_end_single_control: single_end_single_control:
...@@ -55,7 +55,7 @@ single_end_single_control: ...@@ -55,7 +55,7 @@ single_end_single_control:
except: except:
- master - master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false - NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false
- pytest -m singlecontrol - pytest -m singlecontrol
single_end_diff: single_end_diff:
...@@ -65,7 +65,7 @@ single_end_diff: ...@@ -65,7 +65,7 @@ single_end_diff:
except: except:
- master - master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte false - NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte false
- pytest -m singleend - pytest -m singleend
- pytest -m singlediff - pytest -m singlediff
...@@ -74,7 +74,7 @@ paired_end_diff: ...@@ -74,7 +74,7 @@ paired_end_diff:
- master - master
stage: multiple stage: multiple
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false - NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false
- pytest -m pairedend - pytest -m pairedend
- pytest -m paireddiff - pytest -m paireddiff
...@@ -83,5 +83,5 @@ single_end_skip: ...@@ -83,5 +83,5 @@ single_end_skip:
only: only:
- master - master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --skipPlotProfile true --astrocyte false - NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --skipPlotProfile true --astrocyte false
- pytest -m singleskip_true - pytest -m singleskip_true
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment