From d5e6975741bc7764046e1dd0c4551711b96a44b4 Mon Sep 17 00:00:00 2001
From: Beibei Chen <beibei.chen@utsouthwestern.edu>
Date: Tue, 25 Apr 2017 13:27:45 -0500
Subject: [PATCH] Add deeptools for twobitreader package
---
workflow/main.nf | 2 ++
1 file changed, 2 insertions(+)
diff --git a/workflow/main.nf b/workflow/main.nf
index 63c2c2b..8425afc 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -117,6 +117,7 @@ process run_meme_original {
"""
module load python/2.7.x-anaconda
module load R/3.3.2-gccmkl
+ module add deeptools/2.3.5
module load meme/4.11.1-gcc-openmpi
python $baseDir/scripts/runMemechip.py -i $design_meme -g ${params.genomepath} -l ${toppeakcount}
"""
@@ -133,6 +134,7 @@ process run_meme_diffpeak {
"""
module load python/2.7.x-anaconda
module load R/3.3.2-gccmkl
+ module add deeptools/2.3.5
module load meme/4.11.1-gcc-openmpi
python $baseDir/scripts/runMemechip.py -i $diffpeak_design -g ${params.genomepath} -l ${toppeakcount}
"""
--
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