diff --git a/workflow/tests/test_annotate_peaks.py b/workflow/tests/test_annotate_peaks.py index 0a6bf8fc36669a5981658f12dd6195d701c7caf3..784213b22509895bb3f6a904cc25cd8383f5806b 100644 --- a/workflow/tests/test_annotate_peaks.py +++ b/workflow/tests/test_annotate_peaks.py @@ -25,8 +25,10 @@ def test_annotation_singleend(): annotation_file = test_output_path + 'ENCSR238SGC.chipseeker_annotation.tsv' assert os.path.exists(annotation_file) assert utils.count_lines(annotation_file) >= 149284 - df = pd.read_csv(annotation_file, sep = "\t") - assert df['symbol'].notna().all() + df = pd.read_csv(annotation_file, sep = "\t", header = 0) + print(df.head()) + #assert df['symbol'].notna().all() + assert not(df['symbol'].isnull().values.any()) @pytest.mark.pairedend @@ -44,5 +46,7 @@ def test_annotation_pairedend(): annotation_file = test_output_path + 'ENCSR729LGA.chipseeker_annotation.tsv' assert os.path.exists(annotation_file) assert utils.count_lines(annotation_file) >= 25367 - df = pd.read_csv(annotation_file, sep = "\t") - assert df['symbol'].notna().all() + df = pd.read_csv(annotation_file, sep = "\t", header = 0) + print(df.head()) + #assert df['symbol'].notna().all() + assert not(df['symbol'].isnull().values.any())