From c41e1217cd0cf26caa2bd45884af2342f06438cf Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 10 Oct 2017 15:11:01 -0500
Subject: [PATCH] Fix outputs.
---
workflow/main.nf | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index a1279d3..fd0c59d 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -143,9 +143,10 @@ process filterReads {
output:
- set sampleId, file('*.bam'), biosample, factor, treatment, replicate, controlId into dedupReads
+ set sampleId, file('*.bam'), file('*.bai'), biosample, factor, treatment, replicate, controlId into dedupReads
file '*flagstat.qc' into dedupReadsStats
file '*pbc.qc' into dedupReadsComplexity
+ file '*dup.qc' into dupReads
script:
--
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