From c3be6be2f5b48cbe52312a3b1c2505287aebbb05 Mon Sep 17 00:00:00 2001
From: Beibei Chen <beibei.chen@utsouthwestern.edu>
Date: Wed, 15 Mar 2017 13:42:37 -0500
Subject: [PATCH] update form
---
astrocyte_pkg.yml | 10 ++++++++--
1 file changed, 8 insertions(+), 2 deletions(-)
diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml
index 686e4e4..3265925 100644
--- a/astrocyte_pkg.yml
+++ b/astrocyte_pkg.yml
@@ -82,6 +82,12 @@ workflow_parameters:
description: |
Bam files of all samples
+ - id: bais
+ type: files
+ required: true
+ description: |
+ Bam index files of all samples
+
- id: peaks
type: files
required: true
@@ -96,7 +102,7 @@ workflow_parameters:
A design file listing pairs of sample name and sample group. Must be in csv format
Columns must include: SampleID,Tissue, Factor, Condition, Replicate, Peaks, bamReads, bamControl, ControlID, PeakCaller
- - id: genome
+ - id: genomepath
type: select
choices:
- [ '/project/shared/bicf_workflow_ref/GRCh38', 'hg38']
@@ -106,7 +112,7 @@ workflow_parameters:
description: |
Reference genome for annotation
- - id: toppeak
+ - id: toppeakcount
type: integer
required: true
description: |
--
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