diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml index 686e4e431734a5f659d0a1c8a92fbb988caafefc..32659255ab6fc81c2b7bd527eb5ccfcba1f531dd 100644 --- a/astrocyte_pkg.yml +++ b/astrocyte_pkg.yml @@ -82,6 +82,12 @@ workflow_parameters: description: | Bam files of all samples + - id: bais + type: files + required: true + description: | + Bam index files of all samples + - id: peaks type: files required: true @@ -96,7 +102,7 @@ workflow_parameters: A design file listing pairs of sample name and sample group. Must be in csv format Columns must include: SampleID,Tissue, Factor, Condition, Replicate, Peaks, bamReads, bamControl, ControlID, PeakCaller - - id: genome + - id: genomepath type: select choices: - [ '/project/shared/bicf_workflow_ref/GRCh38', 'hg38'] @@ -106,7 +112,7 @@ workflow_parameters: description: | Reference genome for annotation - - id: toppeak + - id: toppeakcount type: integer required: true description: |