From bc3cbdee080e1620bb7894a8754852458e6f4261 Mon Sep 17 00:00:00 2001 From: Venkat Malladi <venkat.malladi@utsouthwestern.edu> Date: Thu, 19 Mar 2020 22:30:26 -0500 Subject: [PATCH] Add new parrallel unit test. --- .gitlab-ci.yml | 9 +++++++-- workflow/tests/plot_profile.bats | 4 ---- 2 files changed, 7 insertions(+), 6 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 0f90138..10cbc0e 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -14,10 +14,15 @@ stages: user_configuration: stage: unit script: - - module load singularity/3.0.2 - - singularity run docker://bats/bats:v1.1.0 --tap workflow/tests/plot_profile.bats - pytest -m unit --cov=./workflow/scripts +bash_tests: + stage: unit + script: + - module load singularity/3.0.2 + - module load deeptools/2.5.0.1 + - singularity run docker://bats/bats:v1.1.0 --tap workflow/tests/plot_profile.bats + astrocyte: stage: astrocyte script: diff --git a/workflow/tests/plot_profile.bats b/workflow/tests/plot_profile.bats index a1b78a3..8c435b7 100644 --- a/workflow/tests/plot_profile.bats +++ b/workflow/tests/plot_profile.bats @@ -2,10 +2,6 @@ profile_script="./workflow/scripts/plot_profile.sh" -setup() { - module load deeptools/2.5.0.1 -} - @test "Test deeptools present" { source ${profile_script} run check_tools -- GitLab