From bc3cbdee080e1620bb7894a8754852458e6f4261 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Thu, 19 Mar 2020 22:30:26 -0500
Subject: [PATCH] Add new parrallel unit test.
---
.gitlab-ci.yml | 9 +++++++--
workflow/tests/plot_profile.bats | 4 ----
2 files changed, 7 insertions(+), 6 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0f90138..10cbc0e 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -14,10 +14,15 @@ stages:
user_configuration:
stage: unit
script:
- - module load singularity/3.0.2
- - singularity run docker://bats/bats:v1.1.0 --tap workflow/tests/plot_profile.bats
- pytest -m unit --cov=./workflow/scripts
+bash_tests:
+ stage: unit
+ script:
+ - module load singularity/3.0.2
+ - module load deeptools/2.5.0.1
+ - singularity run docker://bats/bats:v1.1.0 --tap workflow/tests/plot_profile.bats
+
astrocyte:
stage: astrocyte
script:
diff --git a/workflow/tests/plot_profile.bats b/workflow/tests/plot_profile.bats
index a1b78a3..8c435b7 100644
--- a/workflow/tests/plot_profile.bats
+++ b/workflow/tests/plot_profile.bats
@@ -2,10 +2,6 @@
profile_script="./workflow/scripts/plot_profile.sh"
-setup() {
- module load deeptools/2.5.0.1
-}
-
@test "Test deeptools present" {
source ${profile_script}
run check_tools
--
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