diff --git a/workflow/main.nf b/workflow/main.nf index 721e61af3b2976e5acbcbbbda8df09b5e1e44a1b..05da69cec348150a9160d49e9a8db25235294d43 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -7,7 +7,7 @@ params.reads = "$baseDir/../test_data/*.fastq.gz" params.pairedEnd = false params.designFile = "$baseDir/../test_data/design_ENCSR238SGC_SE.txt" -params.genome = 'GRCh38' +params.genome = 'GRCm38' params.genomes = [] params.bwaIndex = params.genome ? params.genomes[ params.genome ].bwa ?: false : false