diff --git a/CHANGELOG.md b/CHANGELOG.md index 1e3a3603355e1deb3c5c894bf36b1e2ddc2a923a..2f242b11a4305684fc645a7a0a5521ad5b87725b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,10 +3,17 @@ All notable changes to this project will be documented in this file. ## [Unreleased] + +## [publish_1.0.6 ] - 2019-05-31 ### Added - MIT LICENSE - Fix references.md link in citation of README.md - Add Nextflow to references.md +- Check for correct genome input +- Check for correct output for motif serach + +### Fixed +- Path to reference fasta file ## [publish_1.0.5 ] - 2019-05-16 ### Fixed diff --git a/LICENSE.md b/LICENSE.md index aff8e3b4a3f5e77d9525a280d739f709477a54a5..5b4b67c8e0190980e6cdcaf7606476815b647c9b 100644 --- a/LICENSE.md +++ b/LICENSE.md @@ -4,7 +4,7 @@ Copyright (c) 2019, University of Texas Southwestern Medical Center. All rights reserved. -Contributors: Spencer D. Barnes, Holly Ruess, Beibei Chen, Venkat S. Malladi +Contributors: Spencer D. Barnes, Holly Ruess, Jeremy A. Mathews, Beibei Chen, Venkat S. Malladi Department: Bioinformatic Core Facility, Department of Bioinformatics diff --git a/README.md b/README.md index 019cb388266ba08859181b1bb0f3b7c29184e99a..e2361654d9dda12c7692d8bd1f8e8edd95f0fda4 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # **CHIPseq Manual** -## Version 1.0.5 -## May 16, 2019 +## Version 1.0.6 +## May 31, 2019 # BICF ChIP-seq Pipeline diff --git a/docs/references.md b/docs/references.md index 0420c96f228951608f181bd6b341faa6fd74d4af..e3f78fbe6f21627624ac65da054912e061a0acf3 100644 --- a/docs/references.md +++ b/docs/references.md @@ -52,7 +52,7 @@ * Ewels P., Magnusson M., Lundin S. and Käller M. 2016. MultiQC: Summarize analysis results for multiple tools and samples in a single report. Bioinformatics 32(19): 3047–3048. doi:[10.1093/bioinformatics/btw354](https://dx.doi.org/10.1093/bioinformatics/btw354) 17. **BICF ChIP-seq Analysis Workflow**: - * Spencer D. Barnes, Holly Ruess, Beibei Chen, & Venkat S. Malladi. (2019). BICF ChIP-seq Analysis Workflow (publish_1.0.5). Zenodo. doi:[10.5281/zenodo.2648844](https://doi.org/10.5281/zenodo.2648844) + * Spencer D. Barnes, Holly Ruess, Jeremy A. Mathews, Beibei Chen, & Venkat S. Malladi. (2019). BICF ChIP-seq Analysis Workflow (publish_1.0.5). Zenodo. doi:[10.5281/zenodo.2648844](https://doi.org/10.5281/zenodo.2648844) 18. **Nextflow**: * Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., & Notredame, C. (2017). Nextflow enables reproducible computational workflows. Nature biotechnology, 35(4), 316.