From b0bc81ffb4af67583d9a0dc52f3eb806b5ec4bd3 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Fri, 19 Jul 2019 07:35:24 -0500
Subject: [PATCH] add assert of new test
---
workflow/tests/test_pool_and_psuedoreplicate.py | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/workflow/tests/test_pool_and_psuedoreplicate.py b/workflow/tests/test_pool_and_psuedoreplicate.py
index fde2bb8..c7bb64e 100644
--- a/workflow/tests/test_pool_and_psuedoreplicate.py
+++ b/workflow/tests/test_pool_and_psuedoreplicate.py
@@ -70,8 +70,7 @@ def test_single_rep(design_experiment_2):
shutil.copy(test_design_path + 'A_1.tagAlign.gz', cwd)
shutil.copy(test_design_path + 'B_1.tagAlign.gz', cwd)
single_rep = pool_and_psuedoreplicate.generate_design('false', 1.2, design_experiment_2, cwd, 1, 1)
- design_df = pd.read_csv(single_rep, sep="\t")
- assert design_df.shape[0] == 5
+ assert single_rep.shape[0] == 5
@pytest.mark.singleend
def test_pool_and_psuedoreplicate_singleend():
--
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