From ac13c6ccda2feb4133b07b13d9d3709c1b34ea03 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Thu, 16 Nov 2017 21:53:27 -0600
Subject: [PATCH] Flatten splitCSV to fix output erro.
---
workflow/main.nf | 1 +
1 file changed, 1 insertion(+)
diff --git a/workflow/main.nf b/workflow/main.nf
index c290055..10f5a98 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -319,6 +319,7 @@ process poolAndPsuedoReads {
experimentRows = experimentPoolObjs
.collect()
.splitCsv(sep:'\t', header: true)
+ .flatten()
.map { row -> [ row.sample_id, row.tag_align, row.xcor, row.experiment_id, row.biosample, row.factor, row.treatment, row.replicate, row.control_id, row.control_tag_align] }
// Call Peaks using MACS
--
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