From a5928f13aa98725cfa93a27e2e735f9cffe438e5 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Mon, 15 Jul 2019 16:50:38 -0500
Subject: [PATCH] add plot profile test. output to experiment QC folder
---
workflow/main.nf | 4 ++--
workflow/tests/test_plot_profile.py | 18 ++++++++++++++++++
2 files changed, 20 insertions(+), 2 deletions(-)
create mode 100644 workflow/tests/test_plot_profile.py
diff --git a/workflow/main.nf b/workflow/main.nf
index ed2c9e8..a6f486f 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -463,7 +463,7 @@ peaksDesign = experimentPeaks
//plotProfile
process plotProfile {
- publishDir "$outDir/${task.process}", mode: 'copy'
+ publishDir "$outDir/experimentQC", mode: 'copy'
input:
@@ -472,7 +472,7 @@ process plotProfile {
output:
- file("*.png") into plotProfile
+ file(".{png,gz}") into plotProfile
when:
diff --git a/workflow/tests/test_plot_profile.py b/workflow/tests/test_plot_profile.py
new file mode 100644
index 0000000..6c9605d
--- /dev/null
+++ b/workflow/tests/test_plot_profile.py
@@ -0,0 +1,18 @@
+#!/usr/bin/env python3
+
+import pytest
+import os
+import utils
+
+test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
+ '/../output/experimentQC/'
+
+
+@pytest.mark.singleend
+def test_plot_singleend():
+ assert os.path.exists(os.path.join(test_output_path, 'plotProfile.png'))
+
+
+@pytest.mark.pairedend
+def test_plot_pairedend():
+ assert os.path.exists(os.path.join(test_output_path, 'computeMatrix.gz'))
--
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