diff --git a/workflow/main.nf b/workflow/main.nf index ed2c9e8a3b070a46e57355590b1a53e0dfb51bf6..a6f486f2598a076c900eb68816ea2f2e131b225e 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -463,7 +463,7 @@ peaksDesign = experimentPeaks //plotProfile process plotProfile { - publishDir "$outDir/${task.process}", mode: 'copy' + publishDir "$outDir/experimentQC", mode: 'copy' input: @@ -472,7 +472,7 @@ process plotProfile { output: - file("*.png") into plotProfile + file(".{png,gz}") into plotProfile when: diff --git a/workflow/tests/test_plot_profile.py b/workflow/tests/test_plot_profile.py new file mode 100644 index 0000000000000000000000000000000000000000..6c9605d6d654f66adec865372223e13ddeaf6b19 --- /dev/null +++ b/workflow/tests/test_plot_profile.py @@ -0,0 +1,18 @@ +#!/usr/bin/env python3 + +import pytest +import os +import utils + +test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ + '/../output/experimentQC/' + + +@pytest.mark.singleend +def test_plot_singleend(): + assert os.path.exists(os.path.join(test_output_path, 'plotProfile.png')) + + +@pytest.mark.pairedend +def test_plot_pairedend(): + assert os.path.exists(os.path.join(test_output_path, 'computeMatrix.gz'))