From a32a7b3a4e332f5004338c6c21536cf36c9f7443 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Thu, 15 Mar 2018 16:08:34 -0500
Subject: [PATCH] Update nextflow version and reports.
---
.gitlab-ci.yml | 2 +-
workflow/conf/biohpc.config | 8 ++++++++
2 files changed, 9 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c81247a..5c3cefd 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,7 +1,7 @@
before_script:
- module add python/3.6.1-2-anaconda
- pip install --user pytest-pythonpath pytest-cov
- - module load nextflow/0.24.1-SNAPSHOT
+ - module load nextflow/0.27.6
- ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/
stages:
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 4c1099a..19e630d 100644
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -75,3 +75,11 @@ trace {
file = 'pipeline_trace.txt'
fields = 'task_id,native_id,process,name,status,exit,submit,start,complete,duration,realtime,%cpu,%mem,rss'
}
+
+timeline {
+ enabled = true
+}
+
+report {
+ enabled = true
+}
--
GitLab