diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index c81247ab8c0e40c75d4c3df9c36b8a6dd043e368..5c3cefdeca3907c797ba9776141126be2085a191 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1,7 +1,7 @@ before_script: - module add python/3.6.1-2-anaconda - pip install --user pytest-pythonpath pytest-cov - - module load nextflow/0.24.1-SNAPSHOT + - module load nextflow/0.27.6 - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/ stages: diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config index 4c1099a4e133ab3e58abb68ad8aeda47c7c297f7..19e630da1bc945d4f9ddaf92aebc0b9284769483 100644 --- a/workflow/conf/biohpc.config +++ b/workflow/conf/biohpc.config @@ -75,3 +75,11 @@ trace { file = 'pipeline_trace.txt' fields = 'task_id,native_id,process,name,status,exit,submit,start,complete,duration,realtime,%cpu,%mem,rss' } + +timeline { + enabled = true +} + +report { + enabled = true +}