From 9a6d319d676ed49bebb761963732f48f3e5c5da7 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 17 Nov 2017 15:48:12 -0600
Subject: [PATCH] Remove temp narrowPeak files.
---
workflow/scripts/call_peaks_macs.py | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/workflow/scripts/call_peaks_macs.py b/workflow/scripts/call_peaks_macs.py
index eee6bb8..b82516c 100644
--- a/workflow/scripts/call_peaks_macs.py
+++ b/workflow/scripts/call_peaks_macs.py
@@ -235,6 +235,10 @@ def call_peaks_macs(experiment, xcor, control, prefix, genome_size, chrom_sizes)
logger.info("bedGraphToBigWig exited with returncode %d" % (returncode))
assert returncode == 0, "bedGraphToBigWig non-zero return"
+ # Remove temporary files
+ os.remove(clipped_narrowpeak_fn)
+ os.remove(rescaled_narrowpeak_fn)
+
def main():
args = get_args()
--
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