diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index b2135584edf920a7fc432589ec0ae99a76d573e0..037d1e43e37c7daeb21489a00dff85701c8f8fd0 100644
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -65,7 +65,7 @@ process {
     cpus = 32
   }
   withName: multiqcReport {
-    module = ['python/3.6.1-2-anaconda', 'pandoc/2.7', 'multiqc/1.7']
+    module = ['python/3.6.1-2-anaconda', 'pandoc/2.7', 'singularity/3.0.2']
     executor = 'local'
   }
 }
diff --git a/workflow/main.nf b/workflow/main.nf
index f654471c74632c7efdd23836df63c9aba78c2099..bf87941930e7a3737c8610703d224887c113a4d1 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -653,14 +653,11 @@ process multiqcReport {
   script:
 
   """
-  module load python/3.6.1-2-anaconda
-  module load pandoc/2.7
-  module load multiqc/1.7
   echo $workflow.nextflow.version > version_nextflow.txt
-  multiqc --version > version_multiqc.txt
+  singularity exec /project/shared/bicf_workflow_ref/singularity_images/multiqc.sif multiqc --version > version_multiqc.txt
   python --version &> version_python.txt
   python3 $baseDir/scripts/generate_references.py -r $references -o software_references
   python3 $baseDir/scripts/generate_versions.py -o software_versions
-  multiqc -c $multiqc .
+  singularity exec /project/shared/bicf_workflow_ref/singularity_images/multiqc.sif multiqc -c $multiqc .
   """
 }