From 8e9990bd4ec4262b0688476a86c01248a3589616 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sat, 12 Jan 2019 00:19:28 -0600
Subject: [PATCH] Fix variables.
---
.gitlab-ci.yml | 1 -
astrocyte_pkg.yml | 3 ++-
workflow/main.nf | 1 +
3 files changed, 3 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 42320d5..384eba4 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -23,7 +23,6 @@ astrocyte:
- module unload nextflow
- cd ..
- astrocyte_cli validate chipseq_analysis
- - astrocyte_cli test chipseq_analysis
artifacts:
expire_in: 2 days
diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml
index d63bb5f..e1a1846 100644
--- a/astrocyte_pkg.yml
+++ b/astrocyte_pkg.yml
@@ -155,6 +155,7 @@ vizapp_cran_packages:
# List of any Bioconductor packages, not provided by the modules,
# that must be made available to the vizapp
vizapp_bioc_packages:
- - none
+ - none
+
vizapp_github_packages:
- js229/Vennerable
diff --git a/workflow/main.nf b/workflow/main.nf
index 8196b54..ffcffde 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -11,6 +11,7 @@ params.cutoffRatio = 1.2
params.outDir= "$baseDir/output"
params.extendReadsLen = 100
params.topPeakCount = 600
+params.astrocyte = 'false'
// Assign variables if astrocyte
params.genome = 'GRCm38'
--
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