diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 42320d55ab9808ef47748d2143e92a18aa20846d..384eba4fe7f924a44609c76cfcbf0796b4390871 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -23,7 +23,6 @@ astrocyte: - module unload nextflow - cd .. - astrocyte_cli validate chipseq_analysis - - astrocyte_cli test chipseq_analysis artifacts: expire_in: 2 days diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml index d63bb5ffa3a5b8c4a70131f265ff19242e1cde95..e1a1846326e06a833f85e0fa6bd19db836fb43f3 100644 --- a/astrocyte_pkg.yml +++ b/astrocyte_pkg.yml @@ -155,6 +155,7 @@ vizapp_cran_packages: # List of any Bioconductor packages, not provided by the modules, # that must be made available to the vizapp vizapp_bioc_packages: - - none + - none + vizapp_github_packages: - js229/Vennerable diff --git a/workflow/main.nf b/workflow/main.nf index 8196b54bbf6659d628a5dd125abd046e25dc851a..ffcffde1c1d5a5932ee8bf13db3c60d206771083 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -11,6 +11,7 @@ params.cutoffRatio = 1.2 params.outDir= "$baseDir/output" params.extendReadsLen = 100 params.topPeakCount = 600 +params.astrocyte = 'false' // Assign variables if astrocyte params.genome = 'GRCm38'