From 8b57e6720a53f3f2c1691f68cf3389b46a53c0a2 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Wed, 12 Feb 2020 01:11:58 -0600
Subject: [PATCH] Update software version test python.
---
workflow/scripts/generate_versions.py | 2 +-
workflow/tests/test_generate_software_versions.py | 1 +
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/scripts/generate_versions.py b/workflow/scripts/generate_versions.py
index 4f0d8b1..c4814ed 100644
--- a/workflow/scripts/generate_versions.py
+++ b/workflow/scripts/generate_versions.py
@@ -46,7 +46,7 @@ SOFTWARE_REGEX = {
'MEME-ChIP': ['motifSearch_vf/version_memechip.txt', r"Version (\S+)"],
'DiffBind': ['diffPeaks_vf/version_DiffBind.txt', r"Version (\S+)\""],
'deepTools': ['experimentQC_vf/version_deeptools.txt', r"deeptools (\S+)"],
- 'Python': ['version_python.txt', r"python, version (\S+)"],
+ 'Python': ['version_python.txt', r"Python (\S+)"],
'MultiQC': ['version_multiqc.txt', r"multiqc, version (\S+)"],
}
diff --git a/workflow/tests/test_generate_software_versions.py b/workflow/tests/test_generate_software_versions.py
index 04ecdf3..80b9981 100644
--- a/workflow/tests/test_generate_software_versions.py
+++ b/workflow/tests/test_generate_software_versions.py
@@ -21,3 +21,4 @@ def test_software_versions_output():
data_loaded = yaml.load(stream)
assert len(data_loaded['data'].split('<dt>')) == 18
+ assert 'Not Run' not in data_loaded['data'].split('<dt>')[17]
--
GitLab