From 88f2aae1988f35621869d172a28c6fbde334f0ef Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 17 Oct 2017 16:31:47 -0500
Subject: [PATCH] Fix outdir syntax.
---
workflow/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 3853232..636cb53 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -165,7 +165,7 @@ process filterReads {
// Define channel collecting new design file
dedupDesign = dedupReads.
- collectFile(name:'design_dedup.tsv', seed:"sample_id\tbam_reads\tbam_index\tbiosample\tfactor\ttreatment\treplicate\tcontrolId\n", storeDir:""$baseDir/output/design")
+ collectFile(name:'design_dedup.tsv', seed:"sample_id\tbam_reads\tbam_index\tbiosample\tfactor\ttreatment\treplicate\tcontrolId\n", storeDir:"$baseDir/output/design")
// Quality Metrics using deeptools
process experimentQC {
--
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