From 84ea9d596f8b65b88ba03985e3c5db26959604d0 Mon Sep 17 00:00:00 2001 From: Venkat Malladi <vsmalladi@gmail.com> Date: Sun, 17 Mar 2019 15:14:05 -0700 Subject: [PATCH] Fix file path. --- workflow/tests/test_map_reads.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/tests/test_map_reads.py b/workflow/tests/test_map_reads.py index 1d64436..9ff817f 100644 --- a/workflow/tests/test_map_reads.py +++ b/workflow/tests/test_map_reads.py @@ -10,7 +10,7 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ @pytest.mark.singleend def test_map_reads_singleend(): assert os.path.exists(os.path.join(test_output_path, 'ENCLB831RUI/ENCLB831RUI.bam')) - aligned_reads_report = test_output_path + 'ENCLB831RUIENCLB831RUI/ENCLB831RUI.flagstat.qc' + aligned_reads_report = test_output_path + 'ENCLB831RUI/ENCLB831RUI.flagstat.qc' samtools_report = open(aligned_reads_report).readlines() assert '80795025 + 0 in total' in samtools_report[0] assert '80050072 + 0 mapped (99.08% : N/A)' in samtools_report[4] -- GitLab