From 84ea9d596f8b65b88ba03985e3c5db26959604d0 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <vsmalladi@gmail.com>
Date: Sun, 17 Mar 2019 15:14:05 -0700
Subject: [PATCH] Fix file path.
---
workflow/tests/test_map_reads.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/tests/test_map_reads.py b/workflow/tests/test_map_reads.py
index 1d64436..9ff817f 100644
--- a/workflow/tests/test_map_reads.py
+++ b/workflow/tests/test_map_reads.py
@@ -10,7 +10,7 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
@pytest.mark.singleend
def test_map_reads_singleend():
assert os.path.exists(os.path.join(test_output_path, 'ENCLB831RUI/ENCLB831RUI.bam'))
- aligned_reads_report = test_output_path + 'ENCLB831RUIENCLB831RUI/ENCLB831RUI.flagstat.qc'
+ aligned_reads_report = test_output_path + 'ENCLB831RUI/ENCLB831RUI.flagstat.qc'
samtools_report = open(aligned_reads_report).readlines()
assert '80795025 + 0 in total' in samtools_report[0]
assert '80050072 + 0 mapped (99.08% : N/A)' in samtools_report[4]
--
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