diff --git a/workflow/tests/test_map_reads.py b/workflow/tests/test_map_reads.py index 1d64436a1273f82c75929b7ffb468d93c4ae9ec4..9ff817f452c24420788d6cbe75ce14a6989da167 100644 --- a/workflow/tests/test_map_reads.py +++ b/workflow/tests/test_map_reads.py @@ -10,7 +10,7 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ @pytest.mark.singleend def test_map_reads_singleend(): assert os.path.exists(os.path.join(test_output_path, 'ENCLB831RUI/ENCLB831RUI.bam')) - aligned_reads_report = test_output_path + 'ENCLB831RUIENCLB831RUI/ENCLB831RUI.flagstat.qc' + aligned_reads_report = test_output_path + 'ENCLB831RUI/ENCLB831RUI.flagstat.qc' samtools_report = open(aligned_reads_report).readlines() assert '80795025 + 0 in total' in samtools_report[0] assert '80050072 + 0 mapped (99.08% : N/A)' in samtools_report[4]