diff --git a/workflow/tests/test_pool_and_psuedoreplicate.py b/workflow/tests/test_pool_and_psuedoreplicate.py index f0b08fd322c721aeb483c307da7fde31ce35cbe2..17ff9191a195f4af9d8458b840a9113c91c36a79 100644 --- a/workflow/tests/test_pool_and_psuedoreplicate.py +++ b/workflow/tests/test_pool_and_psuedoreplicate.py @@ -10,12 +10,11 @@ import shutil test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ '/../output/design/' -DESIGN_STRING = """sample_id\ttag_align\txcor\tbiosample\tfactor\ttreatment\treplicate\tcontrol_tag_align -A_1\tA_1.bedse.gz\tA_1.cc.qc\tLiver\tH3K27ac\tNone\t1\tB_1.bedse.gz -A_2\tA_2.bedse.gz\tA_2.cc.qc\tLiver\tH3K27ac\tNone\t2\tB_2.bedse.gz +DESIGN_STRING = """sample_id\tse_tag_align\ttag_align\txcor\texperiment_id\tbiosample\tfactor\ttreatment\treplicate\tcontrol_id\tcontrol_tag_align +A_1\tA_1.tagAlign.gz\tA_1.bedse.gz\tA_1.cc.qc\tA\tLiver\tH3K27ac\tNone\t1\tB_1\tB_1.bedse.gz +A_2\tA_2.tagAlign.gz\tA_2.bedse.gz\tA_2.cc.qc\tA\tLiver\tH3K27ac\tNone\t2\tB_2\tB_2.bedse.gz """ - @pytest.fixture def design_experiment(): design_file = StringIO(DESIGN_STRING) @@ -64,7 +63,7 @@ def test_check_controls_single(design_experiment_3): @pytest.mark.unit def test_single_rep(design_experiment_2): cwd = os.getcwd() - shutil.copy('/project/shared/bicf_workflow_ref/workflow_testdata/chipseq/B_1.bedse.gz', cwd) + shutil.copy('/../../test_data/B_1.bedse.gz', cwd) single_rep = pool_and_psuedoreplicate.generate_design('false', 1.2, design_experiment_2, cwd, 1, 1)