From 684ef414f263ccfb0e80af77cbe4594e66f8760b Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sat, 12 Jan 2019 00:13:03 -0600
Subject: [PATCH] Force biocpackage.
---
.gitlab-ci.yml | 1 -
astrocyte_pkg.yml | 7 +++----
2 files changed, 3 insertions(+), 5 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index db68b44..42320d5 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -24,7 +24,6 @@ astrocyte:
- cd ..
- astrocyte_cli validate chipseq_analysis
- astrocyte_cli test chipseq_analysis
- - pytest -m singleend
artifacts:
expire_in: 2 days
diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml
index 1388f66..d63bb5f 100644
--- a/astrocyte_pkg.yml
+++ b/astrocyte_pkg.yml
@@ -128,11 +128,10 @@ workflow_parameters:
Reference species and genome used for alignment and subsequent analysis.
- id: astrocyte
- type: select
+ type: string
required: true
- choices:
- - [ 'true', 'True']
default: 'true'
+ regex: "true"
description: |
Ensure configuraton for astrocyte
@@ -156,6 +155,6 @@ vizapp_cran_packages:
# List of any Bioconductor packages, not provided by the modules,
# that must be made available to the vizapp
vizapp_bioc_packages:
-
+ - none
vizapp_github_packages:
- js229/Vennerable
--
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