diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index db68b44edf999757dae2d41471f6101fab4c6f36..42320d55ab9808ef47748d2143e92a18aa20846d 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -24,7 +24,6 @@ astrocyte: - cd .. - astrocyte_cli validate chipseq_analysis - astrocyte_cli test chipseq_analysis - - pytest -m singleend artifacts: expire_in: 2 days diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml index 1388f66111dfc262566f7a2e4fb0c1ce745ec762..d63bb5ffa3a5b8c4a70131f265ff19242e1cde95 100644 --- a/astrocyte_pkg.yml +++ b/astrocyte_pkg.yml @@ -128,11 +128,10 @@ workflow_parameters: Reference species and genome used for alignment and subsequent analysis. - id: astrocyte - type: select + type: string required: true - choices: - - [ 'true', 'True'] default: 'true' + regex: "true" description: | Ensure configuraton for astrocyte @@ -156,6 +155,6 @@ vizapp_cran_packages: # List of any Bioconductor packages, not provided by the modules, # that must be made available to the vizapp vizapp_bioc_packages: - + - none vizapp_github_packages: - js229/Vennerable