From 6839e190dbd9be336c1658e8c781ee9c3e3d6ab5 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 30 Oct 2017 10:40:29 -0500
Subject: [PATCH] Fix refernece to cutoff value in nextflow process.
---
workflow/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 7cbe553..aa758a8 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -297,12 +297,12 @@ process poolAndPsuedoReads {
if (pairedEnd) {
"""
- python3 $baseDir/scripts/pool_and_psuedoreplicate.py -d $experimentObjs -p -c cutoffRatio
+ python3 $baseDir/scripts/pool_and_psuedoreplicate.py -d $experimentObjs -c $cutoffRatio -p
"""
}
else {
"""
- python3 $baseDir/scripts/pool_and_psuedoreplicate.py -d $experimentObjs -c cutoffRatio
+ python3 $baseDir/scripts/pool_and_psuedoreplicate.py -d $experimentObjs -c $cutoffRatio
"""
}
--
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