From 58c71ef91bb9f6c42fd10948f8051266efc35fa8 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Tue, 16 Jul 2019 07:52:27 -0500
Subject: [PATCH] Add arg parser to pytest

---
 workflow/tests/test_pool_and_psuedoreplicate.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/workflow/tests/test_pool_and_psuedoreplicate.py b/workflow/tests/test_pool_and_psuedoreplicate.py
index e002b8f..9598981 100644
--- a/workflow/tests/test_pool_and_psuedoreplicate.py
+++ b/workflow/tests/test_pool_and_psuedoreplicate.py
@@ -62,7 +62,8 @@ def test_check_controls_single(design_experiment_3):
 
 @pytest.mark.unit
 def test_single_rep(design_experiment_2):
-    single_rep = pool_and_psuedoreplicate.main(design_experiment_2, "true", 1.2)
+    args = self.parser.parse_args(['true', design_experiment_2, 1.2])
+    single_rep = pool_and_psuedoreplicate.main(args.paired, args.design, args.cutoff)
 
 
 @pytest.mark.singleend
-- 
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