From 567ee0eb3766e3e6316395f49cb9cbb147fbf2fd Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Tue, 9 Jul 2019 15:48:25 -0500
Subject: [PATCH] Update gitignore with nextflow and update software reference
test
---
.gitignore | 10 ++++++++++
workflow/tests/test_generate_software_references.py | 2 +-
2 files changed, 11 insertions(+), 1 deletion(-)
diff --git a/.gitignore b/.gitignore
index eb94944..bf385c6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -100,3 +100,13 @@ ENV/
# Mac OS
.DS_Store
+
+# nextflow analysis folders/files
+pipeline_trace*.txt*
+.nextflow*.log*
+report*.html*
+timeline*.html*
+/workflow/output/*
+/work/*
+/test_data/*
+/.nextflow/*
diff --git a/workflow/tests/test_generate_software_references.py b/workflow/tests/test_generate_software_references.py
index 916f891..4d0025d 100644
--- a/workflow/tests/test_generate_software_references.py
+++ b/workflow/tests/test_generate_software_references.py
@@ -20,4 +20,4 @@ def test_software_references_output():
with open(software_references, 'r') as stream:
data_loaded = yaml.load(stream)
- assert len(data_loaded['data'].split('<ul>')) == 18
+ assert len(data_loaded['data'].split('<ul>')) == 19
--
GitLab