From 52095af0b26ec3acf4814beb94b74461fb7c5a86 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 14 Nov 2017 13:19:54 -0600
Subject: [PATCH] Fix psuedo replicate calling.
---
workflow/scripts/pool_and_psuedoreplicate.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index d125edc..6dbe7c9 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -189,12 +189,13 @@ def main():
experiment_id = design_df.at[0, 'experiment_id']
replicate = design_df.at[0, 'replicate']
design_new_df = design_df.loc[np.repeat(design_df.index, 4)].reset_index()
+ design_new_df['replicate'] = design_new_df['replicate'].astype(str)
design_new_df.at[1, 'sample_id'] = experiment_id + '_pr'
design_new_df.at[1, 'replicate'] = '1_pr'
design_new_df.at[2, 'sample_id'] = experiment_id + '_pr'
design_new_df.at[2, 'replicate'] = '2_pr'
design_new_df.at[3, 'sample_id'] = experiment_id + '_pr'
- design_new_df.at[3, 'replicate'] = '2_pr'
+ design_new_df.at[3, 'replicate'] = 'pooled'
# Make 2 self psuedoreplicates
self_pseudoreplicates_dict = {}
--
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