diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py index d125edca50fe7dab5c01514fee5df9438d8c0e07..6dbe7c9169b849ae17163408215a2ea74e3eaffe 100644 --- a/workflow/scripts/pool_and_psuedoreplicate.py +++ b/workflow/scripts/pool_and_psuedoreplicate.py @@ -189,12 +189,13 @@ def main(): experiment_id = design_df.at[0, 'experiment_id'] replicate = design_df.at[0, 'replicate'] design_new_df = design_df.loc[np.repeat(design_df.index, 4)].reset_index() + design_new_df['replicate'] = design_new_df['replicate'].astype(str) design_new_df.at[1, 'sample_id'] = experiment_id + '_pr' design_new_df.at[1, 'replicate'] = '1_pr' design_new_df.at[2, 'sample_id'] = experiment_id + '_pr' design_new_df.at[2, 'replicate'] = '2_pr' design_new_df.at[3, 'sample_id'] = experiment_id + '_pr' - design_new_df.at[3, 'replicate'] = '2_pr' + design_new_df.at[3, 'replicate'] = 'pooled' # Make 2 self psuedoreplicates self_pseudoreplicates_dict = {}