From 48fa7dbb9a8e54f7534d2983b46790bf357370f6 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 24 Oct 2017 18:48:22 -0500
Subject: [PATCH] Fix test fil.e
---
workflow/tests/test_xcor.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/tests/test_xcor.py b/workflow/tests/test_xcor.py
index f5723ed..b0eafa3 100644
--- a/workflow/tests/test_xcor.py
+++ b/workflow/tests/test_xcor.py
@@ -10,7 +10,8 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
def test_convert_reads_singleend():
assert os.path.exists(os.path.join(test_output_path, 'ENCFF833BLU.filt.nodup.tagAlign.15.tagAlign.gz.cc.plot.pdf'))
- df_xcor = pd.read_csv("ENCFF833BLU.filt.nodup.tagAlign.15.tagAlign.gz.cc.qc", sep="\t", header=None)
+ qc_file = os.path.join(test_output_path,"ENCFF833BLU.filt.nodup.tagAlign.15.tagAlign.gz.cc.qc")
+ df_xcor = pd.read_csv(qc_file, sep="\t", header=None)
assert df_xcor[2].iloc[0] == '195,215,230'
assert df_xcor[8].iloc[0] == 1.024836
assert df_xcor[9].iloc[0] == 1.266678
--
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