From 419a82ca3f376d7112ae86c682f097f16f353bf7 Mon Sep 17 00:00:00 2001
From: Holly Ruess <holly.ruess@utsouthwestern.edu>
Date: Fri, 25 Jan 2019 15:59:16 -0600
Subject: [PATCH] edited png to pdf
---
workflow/.DS_Store | Bin 6148 -> 6148 bytes
workflow/scripts/experiment_qc.py | 4 ++--
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/.DS_Store b/workflow/.DS_Store
index 1cfdf47763f95697736ca7303755f243846e9ca2..a563988c14d65d2b69eb3b32e875d0f346a3055a 100644
GIT binary patch
delta 72
zcmZoMXfc=|#>B!ku~2NHo+2a5#(>?7iyfGm7+E&+FbOkGmSeiHS%g`DX)`+qKL=3V
aW<%!h%#-;=961;n7?>D<U~`1X8fE}<whx>D
delta 71
zcmZoMXfc=|#>B)qu~2NHo+2aj#(>?7jLe&PScDlTv$FDU7U2+Pnb>e_Gdl-A2T<8&
ZL5}atlles)IT(O|k%56_bA-qmW&mL>50?M{
diff --git a/workflow/scripts/experiment_qc.py b/workflow/scripts/experiment_qc.py
index affbbc4..34bce3a 100644
--- a/workflow/scripts/experiment_qc.py
+++ b/workflow/scripts/experiment_qc.py
@@ -119,7 +119,7 @@ def check_coverage(design, extension):
bam_files = ' '.join(design['bam_reads'])
labels = ' '.join(design['sample_id'])
- coverage_filename = 'coverage.png'
+ coverage_filename = 'coverage.pdf'
coverage_params = "-n 1000000 --plotTitle \"Sample Coverage\"" + \
" --ignoreDuplicates --minMappingQuality 10"
@@ -155,7 +155,7 @@ def update_controls(design):
def check_enrichment(sample_id, control_id, sample_reads, control_reads, extension):
'''Asses the enrichment per sample.'''
- fingerprint_filename = sample_id + '_fingerprint.png'
+ fingerprint_filename = sample_id + '_fingerprint.pdf'
fingerprint_command = (
"plotFingerprint -b %s %s --extendReads %d --labels %s %s --plotFile %s"
--
GitLab