From 3992cee96b1686c7bf39f905104b4f47429117a2 Mon Sep 17 00:00:00 2001 From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu> Date: Wed, 3 Jul 2019 15:56:15 -0500 Subject: [PATCH] Issues #57 and #59 cause Spencer said today --- README.md | 2 +- docs/references.md | 3 +++ 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 99a5bd0..019cb38 100644 --- a/README.md +++ b/README.md @@ -130,7 +130,7 @@ diffPeaks | *_diffbind.csv | Use only for replicated samples; CSV file of peaks If you find an error, please let the [BICF](mailto:BICF@UTSouthwestern.edu) know and we will add it here. ## Citation -Please cite individual programs and versions used [HERE](docs/references.txt), and the pipeline doi:[10.5281/zenodo.2648844](https://doi.org/10.5281/zenodo.2648844). Please cite in publications: Pipeline was developed by BICF from funding provided by Cancer Prevention and Research Institute of Texas (RP150596). +Please cite individual programs and versions used [HERE](docs/references.md), and the pipeline doi:[10.5281/zenodo.2648844](https://doi.org/10.5281/zenodo.2648844). Please cite in publications: Pipeline was developed by BICF from funding provided by Cancer Prevention and Research Institute of Texas (RP150596). ## Programs and Versions + python/3.6.1-2-anaconda [website](https://www.anaconda.com/download/#linux) [citation](docs/references.txt) diff --git a/docs/references.md b/docs/references.md index af633c8..0420c96 100644 --- a/docs/references.md +++ b/docs/references.md @@ -54,4 +54,7 @@ 17. **BICF ChIP-seq Analysis Workflow**: * Spencer D. Barnes, Holly Ruess, Beibei Chen, & Venkat S. Malladi. (2019). BICF ChIP-seq Analysis Workflow (publish_1.0.5). Zenodo. doi:[10.5281/zenodo.2648844](https://doi.org/10.5281/zenodo.2648844) +18. **Nextflow**: + * Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., & Notredame, C. (2017). Nextflow enables reproducible computational workflows. Nature biotechnology, 35(4), 316. + Please cite in publications: Pipeline was developed by BICF from funding provided by **Cancer Prevention and Research Institute of Texas (RP150596)**. -- GitLab