diff --git a/nextflow.config b/nextflow.config deleted file mode 100644 index 7fc857a03a9f33a5aad2a64d6b608b555422204a..0000000000000000000000000000000000000000 --- a/nextflow.config +++ /dev/null @@ -1,5 +0,0 @@ -process.executor='slurm' -process.queue='super' -process.time='5d' - - diff --git a/workflow/conf/biohpc.conf b/workflow/conf/biohpc.conf new file mode 100644 index 0000000000000000000000000000000000000000..3587d62820c67993ed939318bc4f5aa865e29b26 --- /dev/null +++ b/workflow/conf/biohpc.conf @@ -0,0 +1,13 @@ +process { + executor = 'slurm' + queue='super' + + // Process specific configuration + $checkDesignFile { + module = ['python/3.6.1-2-anaconda'] + } + $trim_galore { + module = ['python/3.6.1-2-anaconda', 'trimgalore/0.4.1'] + cpus = 32 + } +} diff --git a/workflow/nextflow.config b/workflow/nextflow.config new file mode 100644 index 0000000000000000000000000000000000000000..30e47ea1aea37ed6550cc2944d69d26e69887489 --- /dev/null +++ b/workflow/nextflow.config @@ -0,0 +1,5 @@ +profiles { + standard { + includeConfig 'conf/biohpc.config' + } +}