From 375b9e5683a4dc9124f7288091ea354bcbd36b20 Mon Sep 17 00:00:00 2001
From: s181385 <spencer.barnes@utsouthwestern.edu>
Date: Tue, 4 Aug 2020 15:38:22 -0500
Subject: [PATCH] add test to ensure symbol column of peak annotation is not
empty
---
workflow/tests/test_annotate_peaks.py | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/workflow/tests/test_annotate_peaks.py b/workflow/tests/test_annotate_peaks.py
index 7365635..0a6bf8f 100644
--- a/workflow/tests/test_annotate_peaks.py
+++ b/workflow/tests/test_annotate_peaks.py
@@ -25,6 +25,8 @@ def test_annotation_singleend():
annotation_file = test_output_path + 'ENCSR238SGC.chipseeker_annotation.tsv'
assert os.path.exists(annotation_file)
assert utils.count_lines(annotation_file) >= 149284
+ df = pd.read_csv(annotation_file, sep = "\t")
+ assert df['symbol'].notna().all()
@pytest.mark.pairedend
@@ -42,3 +44,5 @@ def test_annotation_pairedend():
annotation_file = test_output_path + 'ENCSR729LGA.chipseeker_annotation.tsv'
assert os.path.exists(annotation_file)
assert utils.count_lines(annotation_file) >= 25367
+ df = pd.read_csv(annotation_file, sep = "\t")
+ assert df['symbol'].notna().all()
--
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