diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml index 44e4b23509e4eed5a289150ebb38eec7de26c62e..929e2316a228ee29b6cd6f8f23627d382b9de224 100644 --- a/astrocyte_pkg.yml +++ b/astrocyte_pkg.yml @@ -134,7 +134,7 @@ workflow_parameters: # The workflow must publish all final output into $baseDir # Name of the R module that the vizapp will run against -vizapp_r_module: 'R/3.2.1-intel' +vizapp_r_module: 'R/3.4.1-gccmkl' # List of any CRAN packages, not provided by the modules, that must be made # available to the vizapp diff --git a/workflow/main.nf b/workflow/main.nf index 491f1ae59be42fefa943fb79aa22c192cd99150a..a48c2f14f9e1eb131ff0bda455a2b19c6105e923 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -405,8 +405,7 @@ process peakAnnotation { } // Define channel to find number of unique experiments -peaksDesign = uniqueExperiments - .readLines() +peaksDesign = Channel from(uniqueExperiments.readLines()) .count() // Calculate Differential Binding Activity