From 2c4516e9495f9b4e0ff4a86e81efa12c7e27749c Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 9 Oct 2017 18:24:28 -0500
Subject: [PATCH] Fix option.
---
workflow/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 444d83f..a1279d3 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -151,12 +151,12 @@ process filterReads {
if (pairedEnd) {
"""
- python3 $baseDir/scripts/map_qc.py -f $mapped -p
+ python3 $baseDir/scripts/map_qc.py -b $mapped -p
"""
}
else {
"""
- python3 $baseDir/scripts/map_qc.py -f $mapped
+ python3 $baseDir/scripts/map_qc.py -b $mapped
"""
}
--
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