From 2c225f3c6c284e95f29d304fcbb246c26011faba Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Mon, 15 Jul 2019 09:29:22 -0500
Subject: [PATCH] fix error in pool and psuedoreplicates
---
workflow/scripts/pool_and_psuedoreplicate.py | 4 ----
1 file changed, 4 deletions(-)
diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index 93d1df4..67f20f1 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -346,10 +346,6 @@ def main():
if not single_control:
control_df = get_read_count_ratio(design_df)
control_files = design_df.control_tag_align.unique()
-l_df = get_read_count_ratio(design_df)
- control_files = design_df.control_tag_align.unique()
- pool_control = pool(control_files, "pool_control", paired)
-
pool_control = pool(control_files, "pool_control", paired)
else:
pool_control = design_df.control_tag_align.unique()[0]
--
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